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Home » Sourdough Discard Recipes

Sourdough French Yogurt Cupcakes

Featured· Sourdough Discard Recipes

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By Emilie Raffa — June 20, 2026 — This post may contain affiliate links.
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My sourdough French yogurt cupcakes are a simple one-bowl sourdough discard recipe made with whole milk yogurt and oil. Topped with creamy vanilla frosting, the soft and fluffy crumb stays moist for days! Makes 12 cupcakes.

Sourdough French yogurt cupcakes topped with with creamy vanilla frosting and colored, nonpareil sprinkles arranged on a marble surface.

Adapted from my popular sourdough French yogurt cake, these cupcakes are the “dressed up” version that I make with creamy drifts of vanilla frosting and colorful, crunchy sprinkles to punctuate any celebration.

The crumb is soft and plush, never dry, thanks to a winning combo of sourdough starter, whole milk yogurt, and oil. I flavor them with vanilla extract only, but almond extract and lemon zest per the original recipe is nice too.

A few things: adding the oil in a slow, steady stream emulsifies the sugar and eggs, creating that signature soft, moist texture. Do not overlook this step. You’ll need a mild oil, such as light olive oil. This is not the time for peppery new season oil from Italy! Your cupcakes will taste bitter.

For the frosting, you’ll have extra. Freeze what’s leftover (who knew?!), or double this cupcake recipe and happily frost all 24.

Sourdough cupcake, halved, showcasing a moist and fluffy interior crumb, set on a flowered plate.
Beaten eggs and sugar in a glass mixing bowl with a hand-held electric mixer.
Frothy mixture of eggs and sugar, beaten together in a glass bowl with a hand-held electric mixer.

Sourdough French Yogurt Cupcakes {Step-By-Step Recipe}

Step 1: Mix Eggs & Sugar

In a large bowl, beat the eggs and sugar together until nice and frothy.

Slow-streamed olive oil in the sourdough cupcake batter.
Sourdough cupcake batter with oil in a large glass mixing bowl.

Step 2: Pour In The Oil

Now, slowly pour in the olive oil. Take your time here. Notice the color change.

Sourdough French yogurt cupcake batter with yogurt and vanilla extract, set on a marble surface with a red-striped linen kitchen towel and egg shells.
Sourdough cupcake batter with sourdough discard in a large bowl, set on a marble surface with a red-striped linen kitchen towel and egg shells.

Step 3: Add Mix-Ins

Next, spoon the yogurt into the bowl, followed by the vanilla extract. Mix to combine. Then add the sourdough starter.

Sourdough cupcake batter with flour in a large glass bowl, set on a marble surface with a red-striped linen kitchen towel.
Finished, mixed sourdough cupcake batter in a large glass bowl on a marble surface with a red-striped linen kitchen towel.

Step 4: Combine Dry & Wet Ingredients

Add the sifted dry ingredients to the bowl, and mix until combined. Using a cookie scoop, portion the batter into a lined muffin tin. Note: this is a same day sourdough recipe.

Tip: You can ferment the batter overnight in the fridge instead of doing the same day option. Oftentimes, I’ll leave out the baking powder and add that in separately the next day (just like my sourdough pancakes). I’ve found that the texture changes slightly; the cupcakes are a little more dense due to how much liquid the flour absorbs on the overnight.

Sourdough cupcake batter portioned into a lined muffin tin with a large cookie scoop.
Baked, unfrosted, sourdough French yogurt cupcakes in a muffin tin.

Step 5: Bake The Cupcakes

Bake @ 350 F for about 20-23 minutes, which gives you the perfect amount of time to make the frosting. When finished, the surface will be golden and a toothpick should come out clean.

Mixed cream cheese, butter and powdered sugar in a glass bowl with a hand-held electric mixer.
Swirls of cream cheese frosting in a glass mixing bowl.

Step 6: Make The Frosting

All ingredients must be softened at room temperature. No exceptions! Start by mixing the butter and cream cheese together, then add the powdered sugar a little bit at a time. Add salt (this makes the flavor pop) and vanilla.

Frosted sourdough French yogurt cupcake with sprinkles.

Step 7: Frost & Decorate

When your cupcakes are completely cool, spread some of the frosting on each one. I’m very casual about this – no need for a piping bag. Top with your favorite sprinkles and pass them around for everyone to enjoy!

Food styling & photography: Saltwater Studio

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Sourdough French yogurt cupcakes with creamy vanilla frosting and sprinkles.

Sourdough French Yogurt Cupcakes

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  • Author: Emilie Raffa
  • Prep Time: 15
  • Cook Time: 23
  • Total Time: 38 minutes
  • Yield: 12 1x
  • Category: Sourdough Discard Recipes
  • Method: Baking
  • Cuisine: French
  • Diet: Vegetarian
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Description

My sourdough French yogurt cupcakes are an easy, one-bowl sourdough discard recipe made with whole milk yogurt and oil. Topped with creamy vanilla frosting, the soft and fluffy crumb stays moist for days! Makes 12 cupcakes.

Notes & Tips

  • Sourdough Starter: For results similar to mine, use active starter or sourdough discard fed @ 100% hydration with all white flour. 
  • Room temperature eggs & yogurt is a must. I microwave the yogurt for 10+ seconds or so, to get it done fast. For the eggs, I plunge them into a bowl of warm water for 10 minutes. Makes a huge difference in the final texture of this cake.
  • For the yogurt: Any plain, full fat, cream on top, whole milk brand is good. No Greek. Too dry. Unless it’s Maple Hill. 
  • Baking options: This is a same day recipe. However, you can chill the batter overnight instead (keep the bowl covered). I like to leave out the baking powder when doing the overnight option and add that in separately the next day.

Ingredients

For the cupcakes

  • 130g (1 cup) all-purpose flour 
  • 2 tsp baking powder
  • ¼ tsp fine salt
  • 200g (scant 1 cup) granulated sugar
  • 2 large eggs (~100g cracked weight)
  • 100g  (½ cup) mild oil (e.g. light olive oil or cold pressed sunflower) 
  • 125g (½ cup) plain whole milk yogurt  
  • 2 tsp vanilla extract
  • 100g (~½ cup) sourdough starter or sourdough discard
  • Sprinkles

Cream cheese frosting

  • 113 g (8 tbsp) salted butter, softened
  • 226 g (8 oz) cream cheese, softened
  • 250 g (2 cups) powdered sugar, sifted
  • 1/4 tsp fine sea salt
  • 1 tsp vanilla extract


Instructions

  1. Preheat your oven to 350 F. Line a muffin tin with paper cups.

  2. Sift the flour, baking powder, and fine sea salt together in a large bowl; set aside. Note: if you are doing the overnight option, leave out the baking powder.

  3. Add the sugar and eggs to a large mixing bowl. Beat together on medium speed until frothy, about 2 minutes (hand-held electric mixer or stand mixer with paddle attachment is fine).

  4. Reduce the speed to low. Slowly pour in the olive oil in a steady stream to emulsify and thicken the sugar and eggs.

  5. Add the yogurt, followed by the vanilla extract.

  6. Add the sourdough starter.

  7. Gradually add the dry ingredients to the wet ingredients. Gently mix by hand until incorporated (do not over mix).

  8. Using a cookie scoop, portion the batter into the prepared muffin tin filling each cup about 2/3- 3/4 full. If there are a few air bubbles, gently tap the pan on the counter to pop them.

  9. Bake on the center rack for 20-23 minutes, or until the top is light golden brown and a toothpick comes out clean.

  10. Transfer the pan to a wire rack to cool completely before frosting.

  11. To make the frosting: add the softened butter and cream cheese to a large bowl. Beat together until smooth and creamy. Gradually add the powdered sugar, a little bit at a time, to absorb. Add the salt. Mix in the vanilla extract and give it a taste!

  12. Frost the cupcakes when completely cool and decorate with sprinkles.


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