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Home » Sourdough Discard Recipes

Moist Sourdough Blueberry Muffins {Overnight Option}

Sourdough Discard Recipes

4.9 from 71 reviews
162 comments
By Emilie Raffa — Updated May 8, 2026 — This post may contain affiliate links.
Jump to Recipe

Your favorite bakery-style muffin, upgraded with tangy sourdough starter (discard or active), fresh blueberries, and bright lemon zest with vanilla. Moist and fluffy inside, with a perfectly crunchy top. Let the batter rest overnight and bake fresh in the morning. Yes, really!

Homemade sourdough blueberry muffins with powdered sugar on a blue plate

Blueberry muffins are classic. Everyone loves them. After years of perfecting recipes- from blueberry cornmeal muffins and buttermilk blueberry crumb muffins– I finally nailed my favorite sourdough discard version.

These muffins are soft yet sturdy, perfectly moist, with bursts of juicy blueberries in every bite. The outside has a lightly crisp crunch, while subtle hints of lemon zest and vanilla add a fresh brightness that will make your heart sing!

Why You’ll Love This Recipe

  • Convenient Prep: Mix the batter, portion into a muffin tin, and chill overnight. In the morning, bake fresh muffins straight from the fridge for an easy, zero-effort homemade breakfast in under 30 minutes.
  • Flavor: The slow overnight fermentation deepens flavor and enhances digestibility thanks to the added sourdough
  • Texture: Balanced softness with a satisfying tender crumb
Sourdough blueberry muffins on a blue plate

Tips for Success:

  • All sourdough starters are different. The consistency of yours (thick vs. thin) will determine the texture of the muffin batter. Aim for a semi-thick batter similar to plain yogurt. This texture will suspend the berries evenly throughout the muffins, and fortify the overall structure once baked. If your batter is too thin, add more flour. Too thick, add more milk.
  • Fresh is best. Compared to frozen blueberries, fresh blueberries they hold their shape better and they are not as wet and mushy after a lengthy, overnight fermentation.
  • Zest or citrus oil? I’ve been playing around with citrus oils in my baking, specifically lemon and orange, and I’m in love. First, they’re super convenient to have on hand especially when you don’t have any lemons or oranges to zest. Second, a little bit goes a long way. They are very concentrated. I use Doterra citrus oils. King Arthur Baking also sells them.
Flour, baking soda & salt in a glass mixing bowl
Flour, baking soda & salt
Sourdough starter and milk in a glass mixing bowl
Sourdough starter & milk
Creamed butter, sugar & eggs in the bowl of a stand mixer
Creamed butter, sugar & eggs
Sourdough blueberry muffin batter with blueberries in a blue bowl with a rubber spatula
Billowy muffin batter with blueberries

How To Make Sourdough Blueberry Muffins {Step-By-Step Recipe}

  • To start, combine the dry ingredients together. Mix sourdough starter and milk in a separate small bowl; set aside. Then cream the butter, sugar, vanilla and lemon zest together, adding the eggs one at a time- I like using a stand mixer for this. Alternatively, you can mix by hand. Just make sure the butter is truly at room temperature (soft) so that it’s easy to do!
  • Now, alternate adding the dry ingredients and the milk. Add the fresh blueberries.
  • Portion the batter into a muffin tin lined with paper cups. Choose to bake right away or ferment overnight. To bake: 375°F (190°C) for about 25-28 minutes, then cool before serving and dusting with powdered sugar. The are so light and delicate!

Note: for the purpose of this blog post, I transferred the muffin batter into a large blue bowl pictured above so you could see the texture better. You do not need to do this if using a stand mixer.

Golden, baked sourdough blueberry muffins in a vintage muffin tin
Sourdough blueberry muffin

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Sourdough Blueberry Muffins

Moist Sourdough Blueberry Muffins (Overnight Option)

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 71 reviews
  • Author: Emilie Raffa
  • Prep Time: 10 minutes
  • Cook Time: 28 minutes
  • Total Time: 38 minutes
  • Yield: 12 muffins 1x
  • Category: Sourdough Discard Recipes
  • Method: Oven-Baked
  • Cuisine: American
  • Diet: Vegetarian
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Description

Your favorite bakery-style muffin, upgraded with tangy sourdough starter (discard or active), fresh blueberries, and bright lemon zest with vanilla. Moist and fluffy inside, with a perfectly crunchy top. Let the batter rest overnight and bake fresh in the morning. Yes, really!


Ingredients

  • 200 g all purpose flour (1 1/2 cups)
  • 1/2 tsp. baking soda
  • 1/2 tsp fine sea salt
  • 60 g sourdough starter (active sourdough starter or sourdough discard)
  • 1/2 cup whole milk
  • 115 g (8 tbsp.) unsalted butter, at room temperature (soft)
  • 200 g (1 cup) granulated sugar
  • 1 tsp. vanilla extract
  • Zest of 1 lemon
  • 2 large eggs
  • 165 g (1 heaping cup) fresh blueberries, plus more for decoration
  • Powdered sugar, to serve


Instructions

  1. Preheat your oven to 375 F/ 190 C. Line a 12-cup muffin pan with paper liners.
  2. Sift the flour, baking soda and salt together in a small bowl; set aside.
  3. Whisk the sourdough starter and milk together in a separate small bowl; set aside.
  4. In a stand mixer fitted with the paddle attachment (or by hand with a wooden spoon): cream the butter, sugar, vanilla extract and zest together. Add the eggs, one at a time, beating well after each addition.
  5. Working in batches, add 1/2 of the flour mixture. Once absorbed, add half of the milk mixture. Repeat until everything is used up and the batter is smooth and well incorporated.
  6. Gently fold the blueberries into the bowl with a rubber spatula. Make sure to evenly distribute the berries throughout the batter (check the bottom of the bowl!).
  7. Fill the muffin pan, about 3/4 of the way full. Top with a few berries if you like, making sure to tuck them in so they don’t pop out during baking.
  8. At this point, you can bake right away or chill overnight, for 12+ hours.
  9. To bake now: place the tin on the center rack and bake for 25-28 minutes.
  10. To bake later: remove the tin from the refrigerator; discard the foil. Bake straight from cold for 25-28 minutes.
  11. Cool the muffins in the pan for 15 minutes. Transfer to a wire rack to finish cooling so the bottoms don’t get soggy.
  12. Serve warm or at room temperature with powdered sugar.

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Filed Under: Sourdough Discard Recipes

162 Comments

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    Comments

  1. Pam says

    May 29, 2023 at 5:11 pm

    OMG!!!! I seriously can’t speak right now! I just made these blueberry muffins and I think I’ve died and now in heaven!! That was THE BEST thing I’ve ever put in my mouth!!! My hubby agrees!!! I’m getting ready to make more now and freeze!

    Reply
  2. Nan says

    May 25, 2023 at 1:41 pm

    The muffins are incredible—the perfect balance of flavor along with a very smooth texture. The recipe creates a beautiful treat that you’ll be happy to share with others. Thank you for your hard work and persistence in creating this recipe. I’m certain it’s one that will be used frequently!

    Reply
  3. Patti says

    May 25, 2023 at 11:13 am

    Hi! I’m looking for a Muffin Recipe using Rhubarb. Can I use this recipe and simply use rhubarb instead of blueberries? We have a large patch of rhubarb in our garden that’s ready for picking!

    P.S. I have your book Artisan Sourdough Made Simple and just took out of the oven two loaves of your Cheddar Jalapeño & Chive – it smells absolutely yummy!

    Reply
  4. Alex says

    May 20, 2023 at 11:59 pm

    Looks great! Have you tried this with whole wheat flour?

    Reply
  5. Melody says

    May 17, 2023 at 12:12 pm

    I fermented in refrigerator overnight. In a.m. I really thought the muffins were going to be too heavy. They didn’t rise at all and the pan felt heavy! To my surprise, they cooked up wonderfully – very fluffy, not heavy at all. I used frozen blueberries since i don’t have fresh. They folded in nicely into the batter in the evening, and were still nice and plump when cooked. Looked like the store bakery muffins, but waaaaay better !!! Thanks for a fantastic FIVE STAR RECIPE :)

    Reply
    • Emilie Raffa says

      May 19, 2023 at 11:35 am

      Melody, this is such great feedback, thank you. You are totally right: the pan will feel heavy the next day! The batter is cold and somewhat dense following an overnight fermentation. And it won’t rise (much). All normal. The final texture bakes up velvety smooth and fluffy. I’m thrilled to hear this about using the frozen berries too. Thanks again for sharing :)

      Reply
  6. Tatia says

    May 15, 2023 at 2:15 pm

    Can I do the overnight ferment before adding the blueberries? I was thinking of bulk fermenting and the next morning folding in the berries and then putting them into the muffin cups. Just curious if you had tried that already or if that would affect the rise?

    Reply
    • Emilie Raffa says

      May 15, 2023 at 3:36 pm

      Hi Tatia! I haven’t tried it this way yet, but it’s worth giving a shot. Just keep in mind the batter will be cold after an overnight rest in the fridge; fold in the berries gently! If you experiment, I’d love to hear how they came out. Enjoy!

      Reply
  7. Joanne c says

    May 14, 2023 at 10:04 am

    I baked these with my kids this morning. And I can tell you they are kid approved! Looking forward to trying the longer fermentation method. Ps I used a couple day old discard from fridge 🙌🏻

    Reply
    • Emilie Raffa says

      May 19, 2023 at 11:36 am

      Excellent to hear! Kid approved… it’s like wining a golden trophy, lol.

      Reply
  8. Lisa Keys says

    May 14, 2023 at 7:51 am

    Eating a warm one now for breakfast. I did the overnight version. These turned out really well. Your recipes never disappoint. Thank you for sharing.

    Reply
    • Emilie Raffa says

      May 19, 2023 at 11:37 am

      Lisa, thank you so much for your kind feedback. I’m glad you liked them! xx

      Reply
  9. Susan Melchior says

    May 13, 2023 at 11:39 am

    If you haven’t tried Trader Joe’s dried blueberries they are delicious when used in baking. They plump up and easier to use than fresh sometimes.
    Your recipe is delicious

    Reply
    • Emilie Raffa says

      May 13, 2023 at 2:58 pm

      Great suggestion, thank you! I’ve only used TJ’s dried blueberries in my sourdough bread and bagels, but I imagine they’re delicious in muffins too.

      Reply
  10. Kim says

    May 13, 2023 at 8:44 am

    I don’t see amount or type of blueberries used in this recipe, please advise. =)

    Reply
    • Emilie Raffa says

      May 13, 2023 at 8:56 am

      Hi Kim! Sorry about that… I managed to forget the most important ingredient, lol. You’ll need 1 heaping cup (165 g) fresh blueberries. Recipe updated.

      Reply
  11. Emily says

    May 13, 2023 at 8:34 am

    Hi,

    This looks great! How many cups of blueberries do you use? Is frozen okay?

    Thanks,
    Emily

    Reply
    • Emilie Raffa says

      May 13, 2023 at 8:59 am

      Hi Emily! You’ll need 1 heaping cup (165 g) fresh blueberries. Typically, I prefer fresh blueberries for best texture, especially if you’re doing the overnight fermentation (they hold their shape better and the batter won’t be as wet- frozen berries release moisture as they defrost). Alternatively, frozen blueberries can be used if you’re baking right away and/or you don’t mind a little trial and error with the overnight option!

      Reply
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